Figure 2: SARS E2-spike protein alignment with 1BWMA protein

gi|29836496|ref|NP_828851.1|        PIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNF 700

gi|30173397|sp|P59594|VGL2_CVH      PIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNF 700

gi|30023954|gb|AAP13567.1|          PIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNF 700

gi|5821923|pdb|1BWM|A               ------------------------------------------AVTQSPRN 8

                                                                              ::: ... 

gi|29836496|ref|NP_828851.1|        SISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS 750

gi|30173397|sp|P59594|VGL2_CVH      SISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS 750

gi|30023954|gb|AAP13567.1|          SISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS 750

gi|5821923|pdb|1BWM|A               KVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYS----------Y 48

                                    .:::*   :.:*  :*. . ***   :.*  .  *::*.           


gi|29836496|ref|NP_828851.1|        GIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFI 800

gi|30173397|sp|P59594|VGL2_CVH      GIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFI 800

gi|30023954|gb|AAP13567.1|          GIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFI 800

gi|5821923|pdb|1BWM|A               GAGSTEK-------GDIPDGYKAS------------------RPSQENFS 73

                                    * .: :.       .:: : **:.                  :*::..* 


gi|29836496|ref|NP_828851.1|        EDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDD 850

gi|30173397|sp|P59594|VGL2_CVH      EDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDD 850

gi|30023954|gb|AAP13567.1|          EDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDD 850

gi|5821923|pdb|1BWM|A               LILELATPSQTSVYFCASGGQGR----------AEQFFGPGTRLTVLGSD 113

                                      * : . : :.. *  . *:            *::* *  .  .:* .*


gi|29836496|ref|NP_828851.1|        MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE 900

gi|30173397|sp|P59594|VGL2_CVH      MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE 900

gi|30023954|gb|AAP13567.1|          MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE 900

gi|5821923|pdb|1BWM|A               YKDDDDKRSGGGGSGGGGSGGSGAQQQVRQSPQSLTVWEGETTILNCSYE 163

                                              .* : .* : *:**  *:  : *    ::*  .  *  **


gi|29836496|ref|NP_828851.1|        NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSS 950

gi|30173397|sp|P59594|VGL2_CVH      NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSS 950

gi|30023954|gb|AAP13567.1|          NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSS 950

gi|5821923|pdb|1BWM|A               DSTFDYFPWYR--------------------------------------- 174

                                    :..     : :                                       


gi|29836496|ref|NP_828851.1|        NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI 1000

gi|30173397|sp|P59594|VGL2_CVH      NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI 1000

gi|30023954|gb|AAP13567.1|          NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI 1000

gi|5821923|pdb|1BWM|A               QFPGKSPALLIAISLVSNKKEDGRFTIFFNKREKKLSLHITDSQPGDSAT 224

                                    :* . *..*   :* :.: : : ::  ::. * :.*. ::*:.    :  

gi|29836496|ref|NP_828851.1|        RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYV 1050

gi|30173397|sp|P59594|VGL2_CVH      RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYV 1050

gi|30023954|gb|AAP13567.1|          RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYV 1050

gi|5821923|pdb|1BWM|A               YFCA--ATGSFNKLTFGAGTRLAVS-------------PY---------- 249

                                      .*  *: .:.: .:* ..*: ..             *: