Figure 3: SARS E2-spike protein (selected region), 1BWMA protein, and Mouse Mammary Tumor Virus superantigen multiple sequence alignment

gi|5821923|pdb|1BWM|A           ------------------------------------------AVTQSPRN 8

gi|30023954|gb|AAP13567.1|      PIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNF 700

gi|2144995|pir||QQMVTM          GLFPTKDDPSAHKRVSPSDKDIFILCCKLGIALLCLGLLGEVAVRARRAL 73

                                                                          ::      

gi|5821923|pdb|1BWM|A           KVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYS----------Y 48

gi|30023954|gb|AAP13567.1|      SISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS 750

gi|2144995|pir||QQMVTM          TLDSFNSSSVQDYNLNNSENSTFLLRQGPQPTSSYKPHR----------F 113

                                .:         .   .. . . :   :..        :            


gi|5821923|pdb|1BWM|A           GAGSTEK-------GDIPDGYKAS------------------RPSQENFS 73

gi|30023954|gb|AAP13567.1|      GIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFI 800

gi|2144995|pir||QQMVTM          CPSEIEIR-------MLAKNYIFTN---------------KTNPIGRLLV 141

                                  .  :          : . *  .                  .*  . : 


gi|5821923|pdb|1BWM|A           LILELATPSQTSVYFCASGGQGR----------AEQFFGPGTRLTVLGSD 113

gi|30023954|gb|AAP13567.1|      EDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDD 850

gi|2144995|pir||QQMVTM          TMLRNESLSFSTIFTQIQKLEMGIENRKR----RSTSIEEQVQGLLTTGL 187

                                  *   . : :      .  :             .      .   :  . 


gi|5821923|pdb|1BWM|A           YKDDDDKRSGGGGSGGGGSGGSGAQQQVRQSPQSLTVWEGETTILNCSYE 163

gi|30023954|gb|AAP13567.1|      MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE 900

gi|2144995|pir||QQMVTM          EVKKGKKSVFVKIGDRWWQLGTYRGPYIYRPTDAPLPYTGRYDLNWDRWV 237

                                             .      *:     :  . :    : *        : 


gi|5821923|pdb|1BWM|A           DSTFDYFPWYR--------------------------------------- 174

gi|30023954|gb|AAP13567.1|      NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSS 950

gi|2144995|pir||QQMVTM          TVNGYKVLYRS--------------------------------------L 249

                                  .     :                                         


gi|5821923|pdb|1BWM|A           QFPGKSPALLIAISLVSNKKEDGRFTIFFNKREKKLSLHITDSQPGDSAT 224

gi|30023954|gb|AAP13567.1|      NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI 1000

gi|2144995|pir||QQMVTM          PFRERLARARPPWCMLSQEEKDDMKQQVHDYIYLGTGMHFWGKIFHTKEG 299

                                 *    .      . :.: : :     .          :.  .       


gi|5821923|pdb|1BWM|A           YFCA--ATGSFNKLTFGAGTRLAVS-------------PY---------- 249

gi|30023954|gb|AAP13567.1|      RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYV 1050

gi|2144995|pir||QQMVTM          TVAG--LIEHYSPKTYGMSYYE---------------------------- 319

                                  ..       .  . * .