Figure 4: SARS E2-spike protein (selected region), 1BWMA protein, and Mycoplasma arthriditis superantigen

gi|5821923|pdb|1BWM|A           ------------------------------------------AVTQSPRN 8

gi|30023954|gb|AAP13567.1|      PIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNF 700

gi|5954490|gb|AAE06994.1|       ---------------------------------------MKLRVENPKKA 11

                                                                           :  . . 

gi|5821923|pdb|1BWM|A           KVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYS----------Y 48

gi|30023954|gb|AAP13567.1|      SISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS 750

gi|5954490|gb|AAE06994.1|       QKHFVQNLNNVVFTNKELED-IYNLSNKEETKEVLKLFK----------- 49

                                .  ..     :   :.. .  :*   :.      *  :            


gi|5821923|pdb|1BWM|A           GAGSTEK-------GDIPDGYKAS------------------RPSQENFS 73

gi|30023954|gb|AAP13567.1|      GIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFI 800

gi|5954490|gb|AAE06994.1|       --------------LKVNQFYRHAFG---------------IVNDYNGLL 70

                                               .: : *: .                      ..: 


gi|5821923|pdb|1BWM|A           LILELATPSQTSVYFCASGGQGR----------AEQFFGPGTRLTVLGSD 113

gi|30023954|gb|AAP13567.1|      EDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDD 850

gi|5954490|gb|AAE06994.1|       EYKEIFNMMFLKLSVVFDTQRKE----------ANNVEQIKRNIAILDEI 110

                                    : .    .  .  .  .            *::.       .:* . 


gi|5821923|pdb|1BWM|A           YKDDDDKRSGGGGSGGGGSGGSGAQQQVRQSPQSLTVWEGETTILNCSYE 163

gi|30023954|gb|AAP13567.1|      MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE 900

gi|5954490|gb|AAE06994.1|       MAKADNDLSYFISQNKNFQELWDKAVKLTKEMKIKLKGQKLDLRDGEVAI 160

                                                .     .   ::    :     :      .    


gi|5821923|pdb|1BWM|A           DSTFDYFPWYR--------------------------------------- 174

gi|30023954|gb|AAP13567.1|      NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSS 950

gi|5954490|gb|AAE06994.1|       N------------------------------------------------- 161

                                :                                                 

gi|5821923|pdb|1BWM|A           QFPGKSPALLIAISLVSNKKEDGRFTIFFNKREKKLSLHITDSQPGDSAT 224

gi|30023954|gb|AAP13567.1|      NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI 1000

gi|5954490|gb|AAE06994.1|       -------KVRELFGSDKNVKELWWFRSLLVKGVYLIKRYYEG----DIEL 200

                                        :   :.  .: :    :  ::      :. :           

gi|5821923|pdb|1BWM|A           YFCA--ATGSFNKLTFGAGTRLAVS-------------PY---------- 249

gi|30023954|gb|AAP13567.1|      RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYV 1050

gi|5954490|gb|AAE06994.1|       KTTSDFAKAVFED------------------------------------- 213

                                   :  *   :..